Installation

Run `pip install wespipeline` to install the latest stable version from PyPI. Documentation for the latest release is hosted on readthedocs.

To install from source, download the project `git clone https://github.com/janchorizo/wespipeline.git` and run `python3 setup.py install` in the root directoy.

Usage

Each of the modules in the package contains tasks for executing a specific setp in the analysis pipline. Use Luigi’s typipcal call format for launching the execution of a task:

`luigi -m wespipeline.reference GetReference --GlobalParams-exp-name hg19 --workers 2 --local-scheduler`