Installation¶
Run `pip install wespipeline`
to install the latest stable version from PyPI. Documentation for the
latest release is hosted on readthedocs.
To install from source, download the project `git clone https://github.com/janchorizo/wespipeline.git`
and run `python3 setup.py install`
in the root directoy.
Usage¶
Each of the modules in the package contains tasks for executing a specific setp in the analysis pipline. Use Luigi’s typipcal call format for launching the execution of a task:
`luigi -m wespipeline.reference GetReference --GlobalParams-exp-name hg19 --workers 2 --local-scheduler`